PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_636DF8B4C.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 692aa    MW: 76630.1 Da    PI: 6.827
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_636DF8B4C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.34.6e-2749139188
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                            +fY+ YA+++GF++r+s+ ++s+++++i++r+ vCskeg++e+++ +    ++++++r+ tr+gCka++++kk + gkw+vtk+++ H
  Traes_4AS_636DF8B4C.2  49 DFYSLYARHAGFRIRISRYTRSRHDNSIISRRIVCSKEGFHETRNCEglhPDQKQQERTGTRVGCKAMIMIKKIDPGKWVVTKFVKTH 136
                            6*******************************************9999999999********************************** PP

                   FAR1  86 nHe 88 
                            nH 
  Traes_4AS_636DF8B4C.2 137 NHG 139
                            **6 PP

2FAR189.45.1e-28187279290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                            fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re + kk    + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eH
  Traes_4AS_636DF8B4C.2 187 FYINYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRAKKeitdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEH 274
                            9*****************************************99999998899999******************************** PP

                   FAR1  86 nHela 90 
                            nH+l 
  Traes_4AS_636DF8B4C.2 275 NHSLL 279
                            **996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-2449139IPR004330FAR1 DNA binding domain
PfamPF031015.1E-26187279IPR004330FAR1 DNA binding domain
PROSITE profilePS501039.178440468IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MEGLPRAFTV MEISSHEPSE AEILIGHEDD TELTPCEGMQ FESEDAARDF YSLYARHAGF  60
RIRISRYTRS RHDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTGTR VGCKAMIMIK  120
KIDPGKWVVT KFVKTHNHGS VPPRKLDIRS AHQDLNPVEK PHSTEEDSVE EPAEGMEFDS  180
EEAAKLFYIN YARLNGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRA KKEITDEGKT  240
KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLLS SKQAPSTSNI TSGENAEFAA  300
KSSDPDEVKV EEYSAGIQCN STDSLTVLYN QLCQEAIKFA KEGSVTEEIY HVAMSALKEA  360
AEKVAQVKSC HPIMPHRGVS GSESKHKVVQ MKTMSASQCS DVAKQKTTPS QLTVFQESVS  420
KLMFIPTNLL TDSGLANSDS NHPSLCAFTS SGRQCGHGSE CSYLHAENRK EDCPEKYQNS  480
TSSRATQGNH STYHGHSEET TVAIPAIPLT LHMPLPRNSP GASADGQYKL LAAPIEAVPI  540
SYRPAEPIRQ PKRSFCNLGP LPGVMSELTR QEKGPHPLVH ATALACGARV VPVEEAASLI  600
KAIESKIRSG GAKIARLPSS RLTRLVPEAI SMSSSSEDGE ENDHSEPPAV NVEGYCHDDQ  660
ISEEMKLQGE ASELETDFEN CSGHENHDTA DC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752890.10.0PREDICTED: uncharacterized protein LOC100841807
TrEMBLW5DXP50.0W5DXP5_WHEAT; Uncharacterized protein
STRINGBRADI1G67740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90313345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.13e-36FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]